STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NUP43Nucleoporin Nup43. (379 aa)    
Predicted Functional Partners:
NUP37
Nucleoporin Nup37.
   
 0.999
RANBP2
E3 SUMO-protein ligase RanBP2.
   
 0.999
NUP107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.999
NUP133
Nuclear pore complex protein Nup133.
   
 0.998
NUP160
Nuclear pore complex protein Nup160.
   
 0.998
NUP85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.998
SEH1L
Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
   
 0.995
NUP98
Nuclear pore complex protein Nup98-Nup96 isoform A.
    
 0.994
SEC13
SEC13-like protein; Belongs to the WD repeat SEC13 family.
   
 0.994
NUP155
Nuclear pore complex protein Nup155.
   
 0.992
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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