STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMED6Transmembrane emp24 domain-containing protein 6. (238 aa)    
Predicted Functional Partners:
LARGE2
Uncharacterized protein.
      
 0.694
CEP76
Centrosomal protein of isoform A.
      
 0.655
OSTM1
Osteopetrosis-associated transmembrane protein 1.
   
  
 0.614
UFM1
Ubiquitin-fold modifier 1.
      
 0.606
TRABD
TraB domain-containing protein.
      
 0.600
NIP7
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
  
 0.595
TMED10
Transmembrane emp24 domain-containing protein 10.
   
 
 0.567
WDYHV1
Protein N-terminal glutamine amidohydrolase.
      
 0.563
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
      
 0.553
NUDT22
Nucleoside diphosphate-linked moiety X motif 22.
      
 0.553
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.