STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUS1tRNA pseudouridine synthase A, mitochondrial. (430 aa)    
Predicted Functional Partners:
WDR4
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.907
TRUB1
Putative tRNA pseudouridine synthase 1.
   
 0.866
DKC1
H/ACA ribonucleoprotein complex subunit 4.
   
 0.845
PUS7L
Pseudouridylate synthase 7-like protein-like protein.
   
 
 0.762
MRPL17
39S ribosomal protein L17, mitochondrial.
  
  
 0.756
TRUB2
Putative tRNA pseudouridine synthase 2.
   
 0.747
DUS3L
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
  
 
 0.736
SEC63
Translocation SEC63-like protein.
      
 0.716
POLR1C
DNA-directed RNA polymerases I and III subunit RPAC1.
  
  
 0.699
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
  
  
 0.699
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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