STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAMP1Lysosome-associated membrane glycoprotein 1. (420 aa)    
Predicted Functional Partners:
LAMP2-1
Lysosome-associated membrane glycoprotein 2 isoform C.
  
0.995
MTOR
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 
 0.907
NPRL2
Nitrogen permease regulator 2-like protein.
    
 
 0.900
RPTOR
Regulatory-associated protein of mTOR isoform A.
    
 
 0.891
SEC13
SEC13-like protein; Belongs to the WD repeat SEC13 family.
    
 
 0.880
NPRL3
Nitrogen permease regulator 3-like protein isoform C.
    
 
 0.880
WDR24
WD repeat-containing protein 24.
    
 
 0.877
DEPDC5
DEP domain-containing protein 5 isoform B.
    
 
 0.874
WDR59
WD repeat-containing protein 59.
    
 
 0.870
CD63
Tetraspanin.
   
 0.869
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.