STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUNH6orf106N_BRCA1_IG domain-containing protein. (254 aa)    
Predicted Functional Partners:
RPS27A
Ubiquitin-40S ribosomal protein S27a.
    
 0.619
PEX5L
PEX5-related protein isoform C.
     
 0.600
PEX5
Peroxisomal biogenesis factor 5 isoform A.
     
 0.600
MAP1LC3C
Microtubule-associated proteins 1A/1B light chain 3C.
    
 0.595
GABARAPL1
Gamma-aminobutyric acid receptor-associated protein-like 1.
    
 0.595
GABARAP
Gamma-aminobutyric acid receptor-associated protein.
    
 0.595
MAP1LC3B
Microtubule-associated proteins 1A/1B light chain 3B.
    
 0.595
Y1Q_0006458
Uncharacterized protein.
    
 0.595
Y1Q_0013352
Microtubule-associated proteins 1A/1B light chain 3C-like.
    
 0.595
MAP1LC3A
Uncharacterized protein.
    
 0.595
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.