STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0016662Serine/threonine-protein kinase PDIK1L-like; Belongs to the protein kinase superfamily. (292 aa)    
Predicted Functional Partners:
BECN1
Beclin-1.
    
 0.824
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.820
PIK3R4
Phosphoinositide 3-kinase regulatory subunit 4.
    
 0.820
RB1CC1
RB1-inducible coiled-coil protein 1 isoform A.
    
 0.789
ATG101
Autophagy-related protein 101.
    
 0.781
ATG14
Beclin 1-associated autophagy-related key regulator.
    
 0.726
ATG9A
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
 
 0.717
ATG3
Autophagy-related protein 3.
   
 
 0.710
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 
 0.695
ATG12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 
 0.695
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.