STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0023918Retinol dehydrogenase 11-like; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (351 aa)    
Predicted Functional Partners:
RBP2
Retinol-binding protein 2; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
   
 
 0.586
RLBP1
Retinaldehyde-binding protein 1.
    
 0.578
OXSM
3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial.
  
 0.494
ASMTL
N-acetylserotonin O-methyltransferase-like protein isoform A.
  
 
 0.442
COQ3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
   
 0.438
SORD
Sorbitol dehydrogenase.
  
 
 0.437
FDX1L
Adrenodoxin-like protein, mitochondrial.
   
 0.434
FDX1LL
Adrenodoxin.
   
 0.434
FDX1-1
Adrenodoxin, mitochondrial isoform B.
   
 0.434
MCAT
Malonyl-CoA-acyl carrier protein transacylase, mitochondrial.
  
 
 0.434
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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