STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AVL9Late secretory pathway AVL9-like protein. (569 aa)    
Predicted Functional Partners:
RAB30
Ras-related protein Rab-30.
      
 0.613
RAB33B
Ras-related protein Rab-33B.
      
 0.591
FAM45A-1
Protein FAM45A isoform B.
      
 0.584
Y1Q_0024241
Protein LCHN.
      
 0.581
RAB33A
Ras-related protein Rab-33A.
      
 0.565
DENND6A-2
UDENN domain-containing protein.
      
 0.560
KBTBD2
Kelch repeat and BTB domain-containing protein 2.
      
 0.538
RAB18
Ras-related protein Rab-18.
      
 0.538
RIC1
RAB6A-GEF complex partner protein 1 isoform C.
      
 0.511
Y1Q_0012698
RIC1 domain-containing protein.
      
 0.511
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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