STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIN7BProtein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family. (208 aa)    
Predicted Functional Partners:
CASK
Peripheral plasma membrane protein CASK isoform B; Belongs to the MAGUK family.
    
 0.991
MPP1
Erythrocyte membrane protein; Belongs to the MAGUK family.
    
 0.795
MPP6
Uncharacterized protein; Belongs to the MAGUK family.
    
 0.751
MPP2
MAGUK p55 subfamily member 2; Belongs to the MAGUK family.
    
 0.751
MOCS3
Adenylyltransferase and sulfurtransferase MOCS3.
    
 
 0.722
PRDX5
Peroxiredoxin-5, mitochondrial.
   
 
 0.671
APBA1
Uncharacterized protein.
    
 0.658
CAMK2G
Calcium/calmodulin-dependent protein kinase type II subunit gamma isoform B; Belongs to the protein kinase superfamily.
    
 0.653
Y1Q_0023066
Protein kinase domain-containing protein.
    
 0.653
Y1Q_0001851
Protein kinase domain-containing protein.
    
 0.653
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (20%) [HD]