STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPATA17Spermatogenesis-associated protein 17. (362 aa)    
Predicted Functional Partners:
EPN3
Epsin-3 isoform A.
      
 0.578
SPATA4
Spermatogenesis-associated protein 4.
   
  
 0.558
MGAT1
Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase.
      
 0.539
LRGUK
Leucine-rich repeat and guanylate kinase domain-containing protein isoform B.
    
 
 0.538
GPATCH2
G patch domain-containing protein 2.
      
 0.538
RAB11A
Ras-related protein Rab-11A.
   
 0.506
RAB11B
Ras-related protein Rab-11B.
   
 0.506
RABL2B
Rab-like protein 2B.
   
 0.506
RAB25
Ras-related protein Rab-25.
   
 0.506
RAB2BL
Ras-related protein Rab-11A-like.
   
 0.506
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.