STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRRC27Leucine-rich repeat-containing protein 27 isoform C. (481 aa)    
Predicted Functional Partners:
CNOT1
CCR4-NOT transcription complex subunit 1 isoform B.
   
 0.909
RQCD1
Cell differentiation RCD1-like protein isoform A.
    
 0.834
CNOT2
CCR4-NOT transcription complex subunit 2 isoform A.
    
 0.833
CNOT8
CCR4-NOT transcription complex subunit 8.
    
 0.818
CNOT7
CCR4-NOT transcription complex subunit 7.
    
 0.818
CNOT4
CCR4-NOT transcription complex subunit 4 isoform A.
    
 0.817
CNOT3-2
CCR4-NOT transcription complex subunit 3.
    
 0.741
CNOT3-1
CCR4-NOT transcription complex subunit 3.
    
 0.741
DDX6
Putative ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.
    
 0.730
CNOT11
CCR4-NOT transcription complex subunit 11.
    
 0.700
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.