STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HPS1Hermansky-Pudlak syndrome 1 protein. (716 aa)    
Predicted Functional Partners:
HPS4
Hermansky-Pudlak syndrome 4 protein.
    
 0.976
HPD
4-hydroxyphenylpyruvate dioxygenase.
     
 0.696
HPDL
4-hydroxyphenylpyruvate dioxygenase.
     
 0.696
HPS3
Hermansky-Pudlak syndrome 3 protein.
      
 0.598
GTF2H1
L-lactate dehydrogenase.
      
 0.591
RAB29
Ras-related protein Rab-7L1.
     
 0.578
RAB32
Ras-related protein Rab-32.
     
 0.578
HPS6
Hermansky-Pudlak syndrome 6 protein.
      
 0.539
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.