STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DENND6AProtein DENND6A isoform B. (527 aa)    
Predicted Functional Partners:
ATP6V1F
V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
      
 0.695
ADAMTS9
A disintegrin and metalloproteinase with thrombospondin motifs 9 isoform C.
      
 0.694
CACNA2D4
Voltage-dependent calcium channel subunit alpha-2/delta-4 isoform C.
      
 0.666
TCTA
T-cell leukemia translocation-altered gene protein homolog.
      
 0.570
GPR25
Putative G-protein coupled receptor 25; Belongs to the G-protein coupled receptor 1 family.
      
 0.565
BNC2
Zinc finger protein basonuclin-2.
      
 0.468
BLOC1S3
Biogenesis of lysosome-related organelles complex 1 subunit 3.
      
 0.467
DENND1B
DENN domain-containing protein 1B isoform A.
      
 0.403
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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