STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0020460Uncharacterized protein. (148 aa)    
Predicted Functional Partners:
CDHR2L
Cadherin-related family member 2.
 
     0.722
USH1C
Harmonin isoform B.
   
 
 0.615
SCT
Secretin.
   
 0.609
CDHR5-1
Cadherin-related family member 5 isoform A.
   
 0.609
PCDH15
Protocadherin-15.
   
 0.609
CDHR2
Cadherin-related family member 2.
 
      0.536
CTNNB1
Catenin beta-1 isoform B.
    
 0.515
JUP
Uncharacterized protein.
    
 0.515
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.