STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABCB6ATP-binding cassette sub-family B member 6, mitochondrial. (699 aa)    
Predicted Functional Partners:
Y1Q_0019109
Multidrug resistance protein 1-like.
 
  
 0.916
FECH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
 
 0.654
NOA1
Nitric oxide-associated protein 1.
      
 0.598
PPOX
Protoporphyrinogen oxidase.
      
 0.593
EARS2
Putative glutamate--tRNA ligase, mitochondrial.
   
 
 0.565
SLC25A38
Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the mitochondrial carrier (TC 2.A.29) family. SLC25A38 subfamily.
      
 0.560
ABCF3
ATP-binding cassette sub-family F member 3.
      
0.559
FXN
Frataxin, mitochondrial.
      
 0.542
GPR143
G-protein coupled receptor 143.
      
 0.542
TMEM14C-1
Transmembrane protein 14C isoform B.
      
 0.542
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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