STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SH3TC1SH3 domain and tetratricopeptide repeat-containing protein 1 isoform A. (966 aa)    
Predicted Functional Partners:
ABLIM2
Actin-binding LIM protein 2 isoform B.
      
 0.613
EMSY
Protein EMSY isoform A.
      
 0.611
GLT8D1
Glycosyltransferase 8 domain-containing protein 1.
      
 0.573
SH3TC2
SH3 domain and tetratricopeptide repeat-containing protein 2 isoform A.
      
0.541
FIG4
Polyphosphoinositide phosphatase.
      
 0.450
SORCS3
VPS10 domain-containing receptor SorCS3 isoform A.
      
 0.416
GLT8D2
Glycosyltransferase 8 domain-containing protein 2.
      
 0.414
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.