STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0021609Uncharacterized protein. (110 aa)    
Predicted Functional Partners:
AKAP10
A-kinase anchor protein 10, mitochondrial.
    
 0.703
THAP1
THAP domain-containing protein 1.
   
 0.607
PRKACB
cAMP-dependent protein kinase catalytic subunit beta isoform C; Belongs to the protein kinase superfamily.
   
 0.607
Y1Q_0006499
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 0.607
THAP7-1
THAP domain-containing protein 8 isoform A.
   
 0.607
PRKX
cAMP-dependent protein kinase catalytic subunit PRKX isoform B.
   
 0.607
EXOSC8
Exosome complex component RRP43.
    
   0.487
TDRKH
Tudor and KH domain-containing protein.
    
 0.448
AKAP1
A-kinase anchor protein 1, mitochondrial.
    
 0.448
PHLPP2
PH domain leucine-rich repeat-containing protein phosphatase 2 isoform B.
   
 0.406
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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