STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGCZZeta-sarcoglycan. (232 aa)    
Predicted Functional Partners:
DAG1
Dystroglycan.
    
 0.649
SSPN
Sarcospan.
   
 0.642
SGCE
Epsilon-sarcoglycan isoform B.
   
 0.615
SGCA
Alpha-sarcoglycan.
   
 0.615
SGCB
Beta-sarcoglycan.
    
 0.601
SGCG
Gamma-sarcoglycan.
  
 
0.599
ZNF469
Zinc finger protein 469.
      
 0.584
TIMD4
Hepatitis A virus cellular receptor 1.
      
 0.538
GLIS2
Zinc finger protein GLIS2.
      
 0.525
PWWP2B
PWWP domain-containing protein 2B.
      
 0.490
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.