STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IARSLIsoleucine--tRNA ligase, cytoplasmic. (792 aa)    
Predicted Functional Partners:
EPRS
Bifunctional glutamate/proline--tRNA ligase isoform A.
  
 0.999
MARS
Methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.998
YARS
Tyrosine--tRNA ligase.
  
 0.956
IARS
Isoleucine--tRNA ligase, cytoplasmic.
 
     0.949
LARS
Leucine--tRNA ligase, cytoplasmic isoform D; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.927
VARS-2
GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.922
IARS2
Isoleucine--tRNA ligase, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
0.912
RARS
Arginine--tRNA ligase, cytoplasmic isoform B; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.888
QARS
Glutamine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.885
PARS2
Putative proline--tRNA ligase, mitochondrial.
   
 0.874
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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