STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DHX58Putative ATP-dependent RNA helicase DHX58 isoform E; Belongs to the small heat shock protein (HSP20) family. (1743 aa)    
Predicted Functional Partners:
MYSM1
Histone H2A deubiquitinase MYSM1 isoform B.
    
 0.983
CREBBP
CREB-binding protein isoform C.
    
 0.979
RBPJ
Recombining binding protein suppressor of hairless isoform B.
    
 0.969
RBPJL
Recombining binding protein suppressor of hairless-like protein isoform A.
    
 0.956
TRRAP
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
    
 0.955
USP22
Ubiquitin carboxyl-terminal hydrolase.
    
 0.950
TAF9B
Transcription initiation factor TFIID subunit 9B.
   
 0.950
TAF10
Transcription initiation factor TFIID subunit 10.
    
 0.947
TADA2A
Transcriptional adapter.
   
 0.926
CCDC101
SAGA-associated factor 29-like protein.
    
 0.926
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.