STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM33RNA-binding protein 33 isoform A. (1078 aa)    
Predicted Functional Partners:
FAM83C
Protein FAM83C.
      
 0.582
PGBD5
PiggyBac transposable element-derived protein 5.
   
 
 0.575
SAMD11
Sterile alpha motif domain-containing protein 11.
      
 0.575
FGGY
FGGY carbohydrate kinase domain-containing protein isoform B.
   
 0.559
USP24
Uncharacterized protein; Belongs to the peptidase C19 family.
   
 
 0.539
NOM1
Nucleolar MIF4G domain-containing protein 1.
      
 0.534
RNF32-1
RING finger protein 32 isoform B.
      
 0.504
AIG1
Androgen-induced 1 protein.
      
 0.441
TESPA1
Protein TESPA1.
      
 0.440
DNAJC21-1
DnaJ-like protein subfamily C member 21 isoform A.
      
 0.424
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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