STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC22C-1Vesicle-trafficking protein SEC22c isoform A; Belongs to the synaptobrevin family. (275 aa)    
Predicted Functional Partners:
STX5
Syntaxin-5.
   
 0.946
GOSR2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.937
BET1
BET1-like protein.
   
 0.936
YKT6
Synaptobrevin-like protein YKT6; Belongs to the synaptobrevin family.
    
 0.932
SCFD1
Sec1 family domain-containing protein 1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.911
STX18
Syntaxin-18.
   
 0.897
USE1
Vesicle transport protein USE1.
    
 0.872
PUS7
Pseudouridylate synthase 7-like protein.
    
 0.865
ZW10
Centromere/kinetochore zw10-like protein.
    
 0.854
VTI1A
Vesicle transport through interaction with t-SNAREs-like protein 1A.
   
 
 0.846
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.