STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAPN10Calpain-10 isoform A; Belongs to the peptidase C2 family. (629 aa)    
Predicted Functional Partners:
CAST
Calpastatin isoform A.
    
 0.694
Y1Q_0018595
Uncharacterized protein.
   
 0.618
CAPNS1
Calpain small subunit 1.
   
 0.618
ITSN1
Intersectin-1.
   
 
  0.599
KCNJ11-2
Uncharacterized protein.
      
 0.565
ABCC8-2
Uncharacterized protein.
      
 0.562
LMAN2L
VIP36-like protein.
   
  
 0.560
HGD
Homogentisate 1,2-dioxygenase.
      
 0.542
SLC22A2
MFS domain-containing protein.
      
 0.521
AGT
Angiotensinogen; Belongs to the serpin family.
     
 0.513
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.