STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0022092Uncharacterized protein. (421 aa)    
Predicted Functional Partners:
Y1Q_0022089
TNase-like domain-containing protein.
 
     0.949
SND1
Tudor domain-containing protein.
 
     0.946
SOD1
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
 
      0.544
PIWIL1-2
Uncharacterized protein; Belongs to the argonaute family.
   
 0.516
PIWIL1
Piwi-like protein 1; Belongs to the argonaute family.
   
 0.516
SLC39A14
Zinc transporter ZIP14.
   
 0.511
SERBP1-1
Plasminogen activator inhibitor 1 RNA-binding protein isoform B.
   
 
 0.496
FMR1-2
Uncharacterized protein.
    
 0.474
TDRKH
Tudor and KH domain-containing protein.
   
 0.462
IMPDH
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.
    
 0.447
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (22%) [HD]