STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR41WD repeat-containing protein 41. (459 aa)    
Predicted Functional Partners:
SMCR8
Smith-Magenis syndrome chromosomal region candidate 8 protein.
    
 0.986
RAB39B
Ras-related protein Rab-39B.
     
 0.934
RAB8A-1
Ras-related protein Rab-8A isoform B.
     
 0.910
RAB42
Putative Ras-related protein Rab-42.
     
  0.900
CDC20B-1
Cell division cycle 20-like protein B isoform A.
   
 0.798
FZR1
Fizzy-related protein-like protein.
   
 0.798
CDC20
Cell division cycle 20-like protein.
   
 0.798
INTU
Protein inturned isoform B.
   
 0.791
CDC27
Cell division cycle 27-like protein.
   
 0.785
WEE2-1
Wee1-like protein kinase.
   
 0.775
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.