STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP1-1Transcription factor TFIIIB component B''-like protein isoform C. (2329 aa)    
Predicted Functional Partners:
POLR3F
DNA-directed RNA polymerase III subunit RPC6.
    
 0.978
POLR3A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.969
POLR3E
DNA-directed RNA polymerase III subunit RPC5.
    
 0.965
BRF2
Transcription factor IIIB subunit.
    
 0.959
POLR3D
DNA-directed RNA polymerase III subunit RPC4.
    
 0.957
GTF3C3
General transcription factor 3C polypeptide 3 isoform B.
   
 0.955
POLR3C
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.955
TBPL2
TATA box-binding protein-like protein 2.
    
 0.954
TBP
TATA-box-binding protein.
    
 0.954
BRF1
Transcription factor IIIB subunit.
    
 0.953
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.