STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCFC2-1GC-rich sequence DNA-binding factor 2 isoform C. (774 aa)    
Predicted Functional Partners:
TFIP11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
    
 0.826
DHX15-2
Uncharacterized protein.
    
 0.779
SYF2
Pre-mRNA-splicing factor SYF2.
    
  0.693
CDC40
Pre-mRNA-processing factor 17.
     
 0.685
WDR25
WD repeat-containing protein 25 isoform A.
     
 0.638
PRPF8
Pre-mRNA-processing-splicing factor 8.
    
   0.637
DQX1
Helicase C-terminal domain-containing protein.
    
 0.633
DHX15
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform B.
    
 0.633
PPIL1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.629
DUS2
tRNA-dihydrouridine(20) synthase [NAD(P)+]-like.
      
 0.590
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.