STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDIA3Protein disulfide-isomerase. (450 aa)    
Predicted Functional Partners:
CALR
Calreticulin.
   
 0.998
TAPBP
Tapasin.
    
 0.996
HSPA5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 0.972
Y1Q_0024190
HATPase_c domain-containing protein.
   
 0.929
Y1Q_0018594
ABC transmembrane type-1 domain-containing protein.
   
  0.916
Y1Q_0017078
Uncharacterized protein.
   
  0.916
CLGN
Calmegin.
   
 0.865
CLGN-2
Uncharacterized protein.
   
 0.865
Y1Q_0019426
Major histocompatibility complex class I-related protein-like; Belongs to the MHC class I family.
    
 0.836
Y1Q_0007688
Major histocompatibility complex class I-related protein-like; Belongs to the MHC class I family.
    
 0.836
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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