STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SATB1SATB homeobox 1. (830 aa)    
Predicted Functional Partners:
UBL5
Ubiquitin like 5.
    
 0.833
ATF4
Activating transcription factor 4.
    
 0.797
UBE2I
Ubiquitin conjugating enzyme E2 I.
    
  0.737
SUMO1
Small ubiquitin like modifier 1.
    
 0.681
KCTD2
Potassium channel tetramerization domain containing 2.
    
  0.681
CASP6
Caspase 6.
    
  0.677
SUMO2
Small ubiquitin like modifier 2.
    
 0.670
SUMO3
Small ubiquitin like modifier 3.
    
 0.670
ENSCPRP00005017059
annotation not available
    
 0.642
TBR1
T-box brain transcription factor 1.
   
  
 0.612
Your Current Organism:
Crocodylus porosus
NCBI taxonomy Id: 8502
Other names: Australian saltwater crocodile, C. porosus, ZMB 278, estuarine crocodile
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.