STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIAH1Siah E3 ubiquitin protein ligase 1. (313 aa)    
Predicted Functional Partners:
CACYBP
Calcyclin binding protein.
    
 0.990
CTNNB1
Catenin beta 1.
    
 0.965
UBE2N
Ubiquitin conjugating enzyme E2 N.
   
 0.847
UBE2T
Ubiquitin conjugating enzyme E2 T.
    
 0.842
UBE2D1
Ubiquitin conjugating enzyme E2 D1.
    
 0.842
UBE2V2
Ubiquitin conjugating enzyme E2 V2.
    
   0.775
JUP
Junction plakoglobin.
    
 0.772
USP19
Ubiquitin specific peptidase 19.
    
   0.757
TBL1X
Transducin beta like 1 X-linked.
    
 0.753
TBL1XR1
Transducin beta like 1 X-linked receptor 1.
    
 0.753
Your Current Organism:
Crocodylus porosus
NCBI taxonomy Id: 8502
Other names: Australian saltwater crocodile, C. porosus, ZMB 278, estuarine crocodile
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.