STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIN28ALin-28 homolog A. (197 aa)    
Predicted Functional Partners:
TUT4
Terminal uridylyl transferase 4.
   
 0.776
ENSCPRP00005015797
annotation not available
   
 0.757
TUT7
Terminal uridylyl transferase 7.
   
 0.714
SALL4
Spalt like transcription factor 4.
   
 
 0.705
ENSCPRP00005027578
annotation not available
    
  0.687
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.664
NCBP2
Nuclear cap binding protein subunit 2.
   
  0.643
ENSCPRP00005015741
annotation not available
   
 0.618
NCBP1
Nuclear cap binding protein subunit 1.
    
  0.606
SNRPB
Small nuclear ribonucleoprotein polypeptides B and B1.
    
  0.605
Your Current Organism:
Crocodylus porosus
NCBI taxonomy Id: 8502
Other names: Australian saltwater crocodile, C. porosus, ZMB 278, estuarine crocodile
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.