STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPATCH1G-patch domain containing 1. (887 aa)    
Predicted Functional Partners:
ENSCPRP00005003883
annotation not available
    
 0.912
SYF2
SYF2 pre-mRNA splicing factor.
    
  0.909
YJU2
YJU2 splicing factor homolog.
    
  0.859
PLRG1
Pleiotropic regulator 1.
    
 
 0.842
CDC40
Cell division cycle 40.
    
  0.809
MTREX
Mtr4 exosome RNA helicase.
   
 0.792
DHX35
DEAH-box helicase 35.
    
 0.791
PPIL1
Peptidylprolyl isomerase like 1.
   
  0.787
DHX33
DEAH-box helicase 33.
    
 0.773
CWC22
CWC22 spliceosome associated protein homolog.
    
  0.770
Your Current Organism:
Crocodylus porosus
NCBI taxonomy Id: 8502
Other names: Australian saltwater crocodile, C. porosus, ZMB 278, estuarine crocodile
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.