STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109315084Histone H3.3. (141 aa)    
Predicted Functional Partners:
LOC109316812
Histone H2B 5.
 
 
 0.984
KDM6A
Lysine demethylase 6A.
   
 0.975
H2AC1
Histone H2A-IV.
 
 
 0.974
ENSCPRP00005027533
annotation not available
   
 0.934
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 0.907
SETD1B
SET domain containing 1B, histone lysine methyltransferase.
   
 0.907
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.899
KDM2A
Lysine demethylase 2A.
    
 0.899
KDM2B
Lysine demethylase 2B.
    
 0.899
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.899
Your Current Organism:
Crocodylus porosus
NCBI taxonomy Id: 8502
Other names: Australian saltwater crocodile, C. porosus, ZMB 278, estuarine crocodile
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.