STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXD1Homeobox protein Hox-D1-like. (245 aa)    
Predicted Functional Partners:
HOXB1
Homeobox B1.
   
0.742
PBX1
PBX homeobox 1.
    
 0.696
PBX3
PBX homeobox 3.
    
 0.696
PBX4
PBX homeobox 4.
    
 0.696
HOXD10
Homeobox D10.
    
 
0.508
MEIS2
Meis homeobox 2.
    
 0.407
NR5A1
Nuclear receptor subfamily 5 group A member 1.
    
 0.405
NR5A2
Nuclear receptor subfamily 5 group A member 2.
    
 0.405
Your Current Organism:
Crocodylus porosus
NCBI taxonomy Id: 8502
Other names: Australian saltwater crocodile, C. porosus, ZMB 278, estuarine crocodile
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.