STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPRD1ARegulation of nuclear pre-mRNA domain containing 1A. (311 aa)    
Predicted Functional Partners:
POLR2B
RNA polymerase II subunit B.
   
 0.933
RPRD1B
Regulation of nuclear pre-mRNA domain containing 1B.
  
 
0.921
RPAP2
RNA polymerase II associated protein 2.
   
 0.920
XRN2
5'-3' exoribonuclease 2.
    
 
 0.866
POLR2C
RNA polymerase II subunit C.
    
 0.840
POLR2D
RNA polymerase II subunit D.
    
  0.839
POLR2E
RNA polymerase II subunit E.
    
  0.815
POLR2F
RNA polymerase II subunit F.
    
 0.815
POLR2L
RNA polymerase II subunit L.
    
  0.805
POLR1B
RNA polymerase I subunit B.
   
 0.787
Your Current Organism:
Crocodylus porosus
NCBI taxonomy Id: 8502
Other names: Australian saltwater crocodile, C. porosus, ZMB 278, estuarine crocodile
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.