STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_08617Vacuolar protein sorting-associated protein 54. (972 aa)    
Predicted Functional Partners:
N302_07717
Vacuolar protein sorting-associated protein 53.
   
 0.998
N302_00388
Syntaxin-16; Belongs to the syntaxin family.
    
 0.906
N302_11247
Syntaxin-6; Belongs to the syntaxin family.
    
 0.888
N302_03077
Coiled-coil domain-containing protein 132.
   
 
 0.885
N302_01848
Protein TSSC1.
    
 
 0.869
N302_00855
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.853
N302_09681
Conserved oligomeric Golgi complex subunit 8.
    
 0.853
N302_05063
Conserved oligomeric Golgi complex subunit 3.
     
 0.839
N302_11721
Conserved oligomeric Golgi complex subunit 7.
     
 0.838
N302_15778
Syntaxin-8.
    
 0.826
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.