STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_10406E3 ubiquitin-protein ligase RNF169. (548 aa)    
Predicted Functional Partners:
N302_11685
Ubiquitin carboxyl-terminal hydrolase 7.
    
 
 0.939
N302_04919
Tumor suppressor p53-binding protein 1.
    
 0.917
N302_14393
Ubiquitin-40S ribosomal protein S27a.
    
  0.904
N302_12112
PAX-interacting protein 1.
   
 0.815
N302_13345
Ubiquitin-conjugating enzyme E2 variant 2.
     
 0.793
N302_14203
BRCA1-associated RING domain protein 1.
   
 0.776
N302_13343
DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.
    
 0.739
N302_02009
Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.
   
 0.732
N302_12760
X-ray repair cross-complementing protein 5.
     
 0.724
N302_05320
BRCA1-A complex subunit RAP80.
     
 0.721
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.