STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_05770HIV Tat-specific factor 1. (425 aa)    
Predicted Functional Partners:
N302_12393
Putative ATP-dependent RNA helicase DDX46.
   
 0.975
N302_09816
Splicing factor 3B subunit 1.
    
 
 0.971
N302_02398
Splicing factor 3A subunit 2.
   
 
 0.952
N302_02498
Crooked neck-like 1.
   
 
 0.945
N302_05012
U2 small nuclear ribonucleoprotein A.
    
 
 0.940
N302_07009
Splicing factor 3B subunit 3.
    
 
 0.886
N302_10880
Splicing factor 3B subunit 4.
    
 
 0.850
N302_12716
Putative ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family.
    
 0.849
N302_12866
Small nuclear ribonucleoprotein F.
   
   0.846
N302_14042
Splicing factor 3A subunit 3.
    
 
 0.829
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.