STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_12118Sonic hedgehog protein. (252 aa)    
Predicted Functional Partners:
N302_11064
Cell adhesion molecule-related/down-regulated by oncogenes.
    
 0.986
N302_06100
Hedgehog-interacting protein.
    
 0.986
N302_11468
Protein patched 1.
   
 0.985
N302_08043
Brother of CDO.
    
 0.984
N302_11535
Protein patched 1.
    
 0.972
N302_09752
Protein patched 1.
    
 0.972
N302_00751
Protein dispatched 1.
    
 0.967
N302_07563
Protein dispatched 2.
    
 0.902
N302_09944
Patched domain-containing protein 2.
    
 0.870
N302_06786
Low-density lipoprotein receptor-related protein 2.
     
 0.861
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.