STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_13706Cysteine--tRNA ligase, cytoplasmic. (822 aa)    
Predicted Functional Partners:
N302_10864
Elongation factor 1-gamma.
   
 0.957
N302_07744
N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase.
  
 
 0.891
N302_13967
Tyrosine--tRNA ligase.
  
 
 0.844
N302_09057
Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2.
    
 0.824
N302_05403
Leucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.800
N302_00737
Bifunctional glutamate/proline--tRNA ligase.
  
  
 0.800
N302_16043
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.762
N302_16410
Phosphoserine phosphatase.
  
 
 0.761
N302_04740
SHMT domain-containing protein.
  
 
 0.726
N302_11789
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 
 0.726
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.