N302_12163 protein (Corvus brachyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N302_12163

Leucine-rich repeat-containing protein 59. (272 aa)

Predicted Functional Partners:

N302_00702

0.831

N302_06119

0.831

N302_00595

0.764

N302_09145

0.648

N302_10864

0.565

N302_07282

0.561

N302_15502

0.525

N302_13050

0.524

N302_00737

0.516

N302_14768

0.516

Your Current Organism:

Corvus brachyrhynchos

NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N302_00595	N302_07282	A0A091F3V2	A0A091F5M4	Netrin-G1.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.810
N302_00595	N302_12163	A0A091F3V2	A0A091EEA9	Netrin-G1.	Leucine-rich repeat-containing protein 59.	0.764
N302_00702	N302_06119	A0A091F442	A0A091FUK3	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	0.453
N302_00702	N302_12163	A0A091F442	A0A091EEA9	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat-containing protein 59.	0.831
N302_00737	N302_10864	A0A091EJW0	A0A091EAI9	Bifunctional glutamate/proline--tRNA ligase.	Elongation factor 1-gamma.	0.999
N302_00737	N302_12163	A0A091EJW0	A0A091EEA9	Bifunctional glutamate/proline--tRNA ligase.	Leucine-rich repeat-containing protein 59.	0.516
N302_06119	N302_00702	A0A091FUK3	A0A091F442	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	0.453
N302_06119	N302_12163	A0A091FUK3	A0A091EEA9	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat-containing protein 59.	0.831
N302_07282	N302_00595	A0A091F5M4	A0A091F3V2	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Netrin-G1.	0.810
N302_07282	N302_09145	A0A091F5M4	A0A091F9V7	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Peripheral plasma membrane protein CASK.	0.596
N302_07282	N302_10864	A0A091F5M4	A0A091EAI9	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Elongation factor 1-gamma.	0.411
N302_07282	N302_12163	A0A091F5M4	A0A091EEA9	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Leucine-rich repeat-containing protein 59.	0.561
N302_07282	N302_13050	A0A091F5M4	A0A091FW52	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Ras-related protein Rab-14.	0.521
N302_09145	N302_07282	A0A091F9V7	A0A091F5M4	Peripheral plasma membrane protein CASK.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.596
N302_09145	N302_12163	A0A091F9V7	A0A091EEA9	Peripheral plasma membrane protein CASK.	Leucine-rich repeat-containing protein 59.	0.648
N302_09145	N302_13050	A0A091F9V7	A0A091FW52	Peripheral plasma membrane protein CASK.	Ras-related protein Rab-14.	0.524
N302_10864	N302_00737	A0A091EAI9	A0A091EJW0	Elongation factor 1-gamma.	Bifunctional glutamate/proline--tRNA ligase.	0.999
N302_10864	N302_07282	A0A091EAI9	A0A091F5M4	Elongation factor 1-gamma.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.411
N302_10864	N302_12163	A0A091EAI9	A0A091EEA9	Elongation factor 1-gamma.	Leucine-rich repeat-containing protein 59.	0.565
N302_10864	N302_15502	A0A091EAI9	A0A091ELH0	Elongation factor 1-gamma.	Small nuclear ribonucleoprotein Sm D3.	0.483