N302_07854 protein (Corvus brachyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N302_07854

Transmembrane protein 64. (117 aa)

Predicted Functional Partners:

N302_06919

0.712

N302_14288

0.707

N302_04799

0.706

N302_10250

0.607

N302_15487

0.594

N302_15545

0.591

N302_08398

0.588

N302_03010

0.549

N302_13794

0.549

N302_07396

0.549

Your Current Organism:

Corvus brachyrhynchos

NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N302_03010	N302_04799	A0A091E8Q6	A0A091F8N8	Transket_pyr domain-containing protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.445
N302_03010	N302_06919	A0A091E8Q6	A0A091FNW8	Transket_pyr domain-containing protein.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.759
N302_03010	N302_07396	A0A091E8Q6	A0A091F9S9	Transket_pyr domain-containing protein.	Transket_pyr domain-containing protein.	0.703
N302_03010	N302_07854	A0A091E8Q6	A0A091EGZ5	Transket_pyr domain-containing protein.	Transmembrane protein 64.	0.549
N302_03010	N302_10250	A0A091E8Q6	A0A091EJK4	Transket_pyr domain-containing protein.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.861
N302_03010	N302_13794	A0A091E8Q6	A0A091EIV2	Transket_pyr domain-containing protein.	Transmembrane protein 41A.	0.549
N302_03010	N302_15545	A0A091E8Q6	A0A091F5J6	Transket_pyr domain-containing protein.	Transket_pyr domain-containing protein.	0.781
N302_04799	N302_03010	A0A091F8N8	A0A091E8Q6	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Transket_pyr domain-containing protein.	0.445
N302_04799	N302_06919	A0A091F8N8	A0A091FNW8	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.999
N302_04799	N302_07396	A0A091F8N8	A0A091F9S9	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Transket_pyr domain-containing protein.	0.445
N302_04799	N302_07854	A0A091F8N8	A0A091EGZ5	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Transmembrane protein 64.	0.706
N302_04799	N302_13794	A0A091F8N8	A0A091EIV2	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Transmembrane protein 41A.	0.706
N302_06919	N302_03010	A0A091FNW8	A0A091E8Q6	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Transket_pyr domain-containing protein.	0.759
N302_06919	N302_04799	A0A091FNW8	A0A091F8N8	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.999
N302_06919	N302_07396	A0A091FNW8	A0A091F9S9	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Transket_pyr domain-containing protein.	0.759
N302_06919	N302_07854	A0A091FNW8	A0A091EGZ5	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Transmembrane protein 64.	0.712
N302_06919	N302_08398	A0A091FNW8	A0A091EXY2	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Selenide, water dikinase 1.	0.567
N302_06919	N302_10250	A0A091FNW8	A0A091EJK4	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.803
N302_06919	N302_13794	A0A091FNW8	A0A091EIV2	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Transmembrane protein 41A.	0.712
N302_06919	N302_15545	A0A091FNW8	A0A091F5J6	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Transket_pyr domain-containing protein.	0.807