STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_15524Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (161 aa)    
Predicted Functional Partners:
N302_07093
Vacuolar protein sorting-associated protein 35.
   
 0.986
N302_11092
Vacuolar protein sorting-associated protein 26B.
   
 0.929
N302_07334
Vacuolar protein sorting-associated protein 26A.
   
 0.929
N302_12299
TBC1 domain family member 5.
    
 
 0.921
N302_00518
Nucleotide diphosphatase.
  
  
 0.858
N302_10700
Down syndrome critical region protein 3.
   
 
 0.804
N302_15694
Sorting nexin-2.
    
 0.787
N302_03845
Sorting nexin-1.
    
 0.787
N302_09563
Sorting nexin-2.
    
 0.787
N302_16398
Rab5 GDP/GTP exchange factor.
   
 
 0.766
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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