STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_16091Collagen alpha-4(VI) chain. (811 aa)    
Predicted Functional Partners:
N302_16090
Collagen alpha-4(VI) chain.
 
      0.899
N302_08911
Integrin alpha-1; Belongs to the integrin alpha chain family.
   
 0.726
N302_16179
Integrin beta.
    
 0.714
N302_02337
Integrin beta.
    
 0.714
N302_03987
Integrin beta.
    
 0.714
N302_09855
Integrin alpha-V; Belongs to the integrin alpha chain family.
   
 0.710
N302_01519
CD44 antigen.
    
 0.708
N302_15386
Integrin beta.
    
 0.700
N302_06761
Integrin alpha-6; Belongs to the integrin alpha chain family.
    
 0.700
N302_06703
Integrin alpha-4; Belongs to the integrin alpha chain family.
    
 0.693
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.