STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_13986Histone deacetylase 1. (439 aa)    
Predicted Functional Partners:
N302_14478
AT-rich interactive domain-containing protein 4B.
    
 0.998
N302_06474
AT-rich interactive domain-containing protein 4A.
    
 0.998
N302_15137
C-terminal-binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.978
N302_12075
C-terminal-binding protein 2; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.978
N302_16224
RNA polymerase-associated protein LEO1.
    
 0.975
N302_05412
C-terminal-binding protein 2; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.974
N302_15018
Suppressor of hairless protein.
   
 0.956
N302_00210
Recombining binding protein suppressor of hairless-like.
   
 0.955
N302_08464
Paired amphipathic helix protein Sin3a.
   
 0.946
N302_02784
Histone deacetylase 2.
  
  
0.940
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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