STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_11173SID1 transmembrane family member 2. (683 aa)    
Predicted Functional Partners:
N302_06122
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.821
N302_01273
Transcription elongation factor SPT5.
   
 0.820
N302_14555
DNA-directed RNA polymerases I and III subunit RPAC1.
    
 0.809
N302_05977
DNA-directed RNA polymerase II subunit RPB4.
    
 0.809
N302_03743
DNA-directed RNA polymerases I, II, and III subunit RPABC3.
    
 0.809
N302_08271
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
    
 0.809
N302_12704
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.809
N302_10863
DNA-directed RNA polymerase II subunit RPB7.
    
 0.809
N302_05643
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.809
N302_02627
Transcription elongation factor SPT4.
    
 0.805
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.