STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_09341E3 ubiquitin-protein ligase RNF128. (269 aa)    
Predicted Functional Partners:
N302_16258
Ubiquitin carboxyl-terminal hydrolase 8; Belongs to the peptidase C19 family.
    
 0.716
N302_14393
Ubiquitin-40S ribosomal protein S27a.
    
  0.707
N302_11121
Ubiquitin carboxyl-terminal hydrolase 2.
    
 0.622
N302_14977
Protein S100; Belongs to the S-100 family.
      
 0.567
N302_10984
Ubiquitin carboxyl-terminal hydrolase.
    
 0.530
N302_10895
RING finger protein 150.
   
0.524
N302_01015
Glucagon family neuropeptides.
      
 0.497
N302_05233
E3 ubiquitin-protein ligase RNF130.
  
0.459
N302_08294
NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6.
      
 0.445
N302_02805
Nogo-B receptor.
    
 
 0.443
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.