N302_02803 protein (Corvus brachyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N302_02803

Golgi-associated PDZ and coiled-coil motif-containing protein. (391 aa)

Predicted Functional Partners:

N302_08734

0.877

N302_09145

0.757

N302_09131

0.734

N302_12785

0.715

N302_06446

0.710

N302_06866

0.710

N302_07961

0.686

N302_12706

0.675

N302_14950

0.664

N302_06622

0.641

Your Current Organism:

Corvus brachyrhynchos

NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N302_02803	N302_06446	A0A091F0H3	A0A091EVE5	Golgi-associated PDZ and coiled-coil motif-containing protein.	Rho-related GTP-binding protein RhoJ.	0.710
N302_02803	N302_06622	A0A091F0H3	A0A091ENW6	Golgi-associated PDZ and coiled-coil motif-containing protein.	Intraflagellar transport protein 172.	0.641
N302_02803	N302_06866	A0A091F0H3	A0A091FVL5	Golgi-associated PDZ and coiled-coil motif-containing protein.	Rho-related GTP-binding protein RhoQ.	0.710
N302_02803	N302_07961	A0A091F0H3	A0A091EKR3	Golgi-associated PDZ and coiled-coil motif-containing protein.	Intraflagellar transport protein 57.	0.686
N302_02803	N302_08734	A0A091F0H3	A0A091EMS0	Golgi-associated PDZ and coiled-coil motif-containing protein.	Cystic fibrosis transmembrane conductance regulator; Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis. Mediates the transport of chloride ions across the cell membrane. Channel activity is coupled to ATP hydrolysis. The ion channel is also permeable to HCO(3-); selectivity depends on the extracellular chloride concentration. Exerts its function also by modulating the activity of other ion channels and transporters. Contributes to the regulation of the pH and the ion content of the epithelial fluid layer.	0.877
N302_02803	N302_09131	A0A091F0H3	A0A091EZA2	Golgi-associated PDZ and coiled-coil motif-containing protein.	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3.	0.734
N302_02803	N302_09145	A0A091F0H3	A0A091F9V7	Golgi-associated PDZ and coiled-coil motif-containing protein.	Peripheral plasma membrane protein CASK.	0.757
N302_02803	N302_12706	A0A091F0H3	A0A091ETR4	Golgi-associated PDZ and coiled-coil motif-containing protein.	PRKCA-binding protein.	0.675
N302_02803	N302_12785	A0A091F0H3	A0A091FIY8	Golgi-associated PDZ and coiled-coil motif-containing protein.	Tetratricopeptide repeat protein 26.	0.715
N302_02803	N302_14950	A0A091F0H3	A0A091F6J2	Golgi-associated PDZ and coiled-coil motif-containing protein.	TRAF3-interacting protein 1.	0.664
N302_06446	N302_02803	A0A091EVE5	A0A091F0H3	Rho-related GTP-binding protein RhoJ.	Golgi-associated PDZ and coiled-coil motif-containing protein.	0.710
N302_06446	N302_08734	A0A091EVE5	A0A091EMS0	Rho-related GTP-binding protein RhoJ.	Cystic fibrosis transmembrane conductance regulator; Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis. Mediates the transport of chloride ions across the cell membrane. Channel activity is coupled to ATP hydrolysis. The ion channel is also permeable to HCO(3-); selectivity depends on the extracellular chloride concentration. Exerts its function also by modulating the activity of other ion channels and transporters. Contributes to the regulation of the pH and the ion content of the epithelial fluid layer.	0.495
N302_06446	N302_09131	A0A091EVE5	A0A091EZA2	Rho-related GTP-binding protein RhoJ.	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3.	0.532
N302_06446	N302_09145	A0A091EVE5	A0A091F9V7	Rho-related GTP-binding protein RhoJ.	Peripheral plasma membrane protein CASK.	0.534
N302_06622	N302_02803	A0A091ENW6	A0A091F0H3	Intraflagellar transport protein 172.	Golgi-associated PDZ and coiled-coil motif-containing protein.	0.641
N302_06622	N302_07961	A0A091ENW6	A0A091EKR3	Intraflagellar transport protein 172.	Intraflagellar transport protein 57.	0.994
N302_06622	N302_12785	A0A091ENW6	A0A091FIY8	Intraflagellar transport protein 172.	Tetratricopeptide repeat protein 26.	0.977
N302_06622	N302_14950	A0A091ENW6	A0A091F6J2	Intraflagellar transport protein 172.	TRAF3-interacting protein 1.	0.984
N302_06866	N302_02803	A0A091FVL5	A0A091F0H3	Rho-related GTP-binding protein RhoQ.	Golgi-associated PDZ and coiled-coil motif-containing protein.	0.710
N302_06866	N302_08734	A0A091FVL5	A0A091EMS0	Rho-related GTP-binding protein RhoQ.	Cystic fibrosis transmembrane conductance regulator; Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis. Mediates the transport of chloride ions across the cell membrane. Channel activity is coupled to ATP hydrolysis. The ion channel is also permeable to HCO(3-); selectivity depends on the extracellular chloride concentration. Exerts its function also by modulating the activity of other ion channels and transporters. Contributes to the regulation of the pH and the ion content of the epithelial fluid layer.	0.495