STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_14265tRNA pseudouridine synthase. (279 aa)    
Predicted Functional Partners:
N302_14555
DNA-directed RNA polymerases I and III subunit RPAC1.
  
  
 0.928
N302_13179
Putative tRNA pseudouridine synthase 2.
  
 0.851
N302_07609
Putative methyltransferase-like 15.
   
 
 0.821
N302_09391
H/ACA ribonucleoprotein complex subunit 4.
  
 0.777
N302_14897
Putative tRNA pseudouridine synthase 1.
  
 0.777
N302_02718
Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3.
   
 
 0.771
N302_08884
tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4.
   
 
 0.743
N302_12017
40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
  
 
 0.729
N302_02155
Uncharacterized protein.
   
 
 0.717
N302_11772
RNA pseudouridylate synthase domain-containing protein 1.
  
  
 0.711
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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