STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_11022Acid sphingomyelinase-like phosphodiesterase 3b. (361 aa)    
Predicted Functional Partners:
N302_06375
Ceramide kinase.
    
 0.842
N302_14718
Sphingomyelin phosphodiesterase 2.
     
 0.835
N302_09054
Neutral ceramidase.
     
 0.822
N302_15733
Ceramide glucosyltransferase.
     
 0.789
N302_04137
Acid ceramidase.
   
 0.787
N302_07047
Sphingomyelin phosphodiesterase 3.
     
 0.745
N302_06702
Ceramide kinase-like.
    
 0.735
N302_15505
Sphingomyelin phosphodiesterase 4.
     
 0.734
N302_15916
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
     
 0.723
N302_05581
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
     
 0.711
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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